Improved Scalability By Using Hardware-Aware Thread Affinities

The complexity of an efficient thread management steadily rises with the number of processor cores and heterogeneities in the design of system architectures, e.g., the topologies of execution units and the memory architecture. In this paper, we show that using information about the system topology combined with a hardware-aware thread management is worthwhile. We present such a hardware-aware approach that utilizes thread affinity to automatically steer the mapping of threads to cores and experimentally analyze its performance. Our experiments show that we can achieve significantly better scalability and runtime stability compared to the ordinary dispatching of threads provided by the operating system

Improved Scalability By Using Hardware-Aware Thread Affinities

The complexity of an efficient thread management steadily rises with the number of processor cores and heterogeneities in the design of system architectures, e.g., the topologies of execution units and the memory architecture. In this paper, we show that using information about the system topology combined with a hardware-aware thread management is worthwhile. We present such a hardware-aware approach that utilizes thread affinity to automatically steer the mapping of threads to cores and experimentally analyze its performance. Our experiments show that we can achieve significantly better scalability and runtime stability compared to the ordinary dispatching of threads provided by the operating system

A New Approach for Visualizing UML Class Diagrams

UML diagrams have become increasingly important in the engineering and reengineering processes for software systems. Of particular interest are UML class diagrams whose purpose is to display class hierarchies (generalizations), associations, aggregations, and compositions in one picture. The combination of hierarchical and non-hierarchical relations poses a special challenge to a graph layout tool. Existing layout tools treat hierarchical and non-hierarchical relations either alike or as separate tasks in a two-phase process as in, e.g., cite{See97}. We suggest a new approach for visualizing UML class diagrams leading to a balanced mixture of the following aesthetic criteria: Crossing minimization, bend minimization, uniform direction within each class hierarchy, no nesting of one class hierarchy within another, orthogonal layout, merging of multiple inheritance edges, and good edge labelling. We have realized our approach within the graph drawing library GoVisual. Experiments show the superiority to state-of-the-art and industrial standard layouts

Subgraph Induced Connectivity Augmentation

Given a planar graph G=(V,E) and a vertex set Wsubseteq V , the subgraph induced planar connectivity augmentation problem asks for a minimum cardinality set F of additional edges with end vertices in W such that G'=(V,Ecup F) is planar and the subgraph of G' induced by W is connected. The problem arises in automatic graph drawing in the context of c -planarity testing of clustered graphs. We describe a linear time algorithm based on SPQR-trees that tests if a subgraph induced planar connectivity augmentation exists and, if so, constructs an minimum cardinality augmenting edge set

An SPQR-Tree Approach to Decide Special Cases of Simultaneous Embedding with Fixed Edges

We present a linear-time algorithm for solving the simulta- neous embedding problem with ?xed edges (SEFE) for a planar graph and a pseudoforest (a graph with at most one cycle) by reducing it to the following embedding problem: Given a planar graph G, a cycle C of G, and a partitioning of the remaining vertices of G, does there exist a planar embedding in which the induced subgraph on each vertex partite of G C is contained entirely inside or outside C ? For the latter prob- lem, we present an algorithm that is based on SPQR-trees and has linear running time. We also show how we can employ SPQR-trees to decide SEFE for two planar graphs where one graph has at most two cycles and the intersection is a pseudoforest in linear time. These results give rise to our hope that our SPQR-tree approach might eventually lead to a polynomial-time algorithm for deciding the general SEFE problem for two planar graphs

A New Approach for Visualizing UML Class Diagrams

UML diagrams have become increasingly important in the engineering and reengineering processes for software systems. Of particular interest are UML class diagrams whose purpose is to display class hierarchies (generalizations), associations, aggregations, and compositions in one picture. The combination of hierarchical and non-hierarchical relations poses a special challenge to a graph layout tool. Existing layout tools treat hierarchical and non-hierarchical relations either alike or as separate tasks in a two-phase process as in, e.g., cite{See97}. We suggest a new approach for visualizing UML class diagrams leading to a balanced mixture of the following aesthetic criteria: Crossing minimization, bend minimization, uniform direction within each class hierarchy, no nesting of one class hierarchy within another, orthogonal layout, merging of multiple inheritance edges, and good edge labelling. We have realized our approach within the graph drawing library GoVisual. Experiments show the superiority to state-of-the-art and industrial standard layouts

The Open Graph Archive: A Community-Driven Effort

In order to evaluate, compare, and tune graph algorithms, experiments on well designed benchmark sets have to be performed. Together with the goal of reproducibility of experimental results, this creates a demand for a public archive to gather and store graph instances. Such an archive would ideally allow annotation of instances or sets of graphs with additional information like graph properties and references to the respective experiments and results. Here we examine the requirements, and introduce a new community project with the aim of producing an easily accessible library of graphs. Through successful community involvement, it is expected that the archive will contain a representative selection of both real-world and generated graph instances, covering significant application areas as well as interesting classes of graphs.Comment: 10 page

HONEI: A collection of libraries for numerical computations targeting multiple processor architectures.

We present HONEI, an open-source collection of libraries offering a hardware oriented approach to numerical calculations. HONEI abstracts the hardware, and applications written on top of HONEI can be executed on a wide range of computer architectures such as CPUs, GPUs and the Cell processor. We demonstrate the flexibility and performance of our approach with two test applications, a Finite Element multigrid solver for the Poisson problem and a robust and fast simulation of shallow water waves. By linking against HONEI's libraries, we achieve a two-fold speedup over straight forward C++ code using HONEI's SSE backend, and additional 3--4 and 4--16 times faster execution on the Cell and a GPU. A second important aspect of our approach is that the full performance capabilities of the hardware under consideration can be exploited by adding optimised application-specific operations to the HONEI libraries. HONEI provides all necessary infrastructure for development and evaluation of such kernels, significantly simplifying their development

Cupe - the CUBIC Pathway Editor

Cupe(CUBIC Pathway Editor) is a graphical editor for the automatic or interactive generation and display of metabolic networks. Cupe combines the user guidance by its graphical user interface (GUI) with the ability of automatic graph drawing and the possibility for manual interaction. Furthermore, it provides a programming interface for analysis, simulation and cross linking of reactions. One of the outstanding features of Cupe is its automatic layout mechanism which is provided by utilising the well-known AGD library. The adaptation and development of layout algorithms for the requirements of metabolic networks is an interdisciplinary cooperation between the Department of Computer Science, Cologne University, the Chair of Algorithm Engineering, Dortmund University, and the Cologne University Bioinformatics Center. Poster presentation in 14th International Symposium on Graph Drawin